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88 Terabyte volume

88 Terabyte volume (mine is bigger than yours …)
Originally uploaded by ChrisDag

Big storage is pretty easy these days.
It’s harder when you want single-namespace or single volumes that are upwards of 100 terabytes in size.
It’s even harder when you try to do it with reasonably priced middle-tier products rather than the high end stuff that costs [...]

2Sep2008 | chrisdag | 0 comments | Continued
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Illumina/Solexa pipeline w/ Grid Engine

Illumina/Solexa pipeline w/ Grid Engine
Originally uploaded by ChrisDag

From the trenches @ BioTeam …
Illumina (www.illumina.com) is one of a few companies involved in the “next generation” DNA Sequencing race. Each company has has technology that wildly decreases the cost and time involved in large scale genome analysis. Everyone in this space wants to be the first [...]

2Sep2008 | chrisdag | 1 comment | Continued
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SGE launchd script maker for Apple OS X 10.5 Leopard

We now have a perl script that will automatically create site-appropriate launchd plist files for Grid Engine - the files are constructed by querying the SGE environment variables and running one of the SGE utility scripts. This may be a more convenient method than downloading our plist files and hand-editing them via the Apple plist editor program.

15Jul2008 | blogadmin | 0 comments | Continued
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Integrating UniCluster Express with Amazon EC2

Chris Dagdigian recently test-drove Univa UD’s UniCluster Express, integrated it with the Amazon Elastic Compute Cloud (EC2).

15Jul2008 | blogadmin | 0 comments | Continued
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Talk slides from 2008 OSGC event

Chris Dagdigian has posted his talk slides from the 2008 OSGC meeting including “LSF & SGE”, “Fun with SGE XML” and “SGE and Amazon EC2″.

19May2008 | blogadmin | 0 comments | Continued
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SGE 6.2beta ‘unboxing’ screencast

A video screencast where BioTeam’s Chris Dagdigian walks through the installation of the newly released Grid Engine 6.2beta code.

16May2008 | blogadmin | 0 comments | Continued
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Mike Cariaso wins the 23andMe “Win your Genome” contest

Congratulations are in order for Mike who was announced as the winner of the “Win your Genome” contest being run by 23andMe. The announcement can be read online here:
http://spittoon.23andme.com/2008/05/14/and-the-winner-is/

15May2008 | blogadmin | 0 comments | Continued
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Inquiry in the Cloud

Bioteam has ported our award winning iNquiry software to the Amazon EC2 cloud computing environment.   Some initial questions and answers are available here:  inquiry-ec2

12May2008 | cdwan | 0 comments | Continued
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The Cloud, on NPR

Yes, the Cloud is hot. We just listened to a brief, non-technical piece on Cloud Computing on National Public Radio:
http://www.npr.org/templates/story/story.php?storyId=90180142&ft=1&f=1019
The issues they touch on include security, using the Cloud to compute your genealogy, and how the consumer has access to super-computation for the first time.

5May2008 | briano | 2 comments | Continued
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Bio-IT World Conference Presentations

Download links for the presentations by Chris Dagdigian and Chris Dwan at the 2008 Bio IT World Conference & Expo

1May2008 | blogadmin | 0 comments | Continued