All Posts Tagged With: "next-gen"
Storage for Next-Gen Sequencing
Presenter slides from the 2009 Storage for Next-Generation Sequencing Workshop(s)
Next Generation Sequencing Data Analysis
On September 20th 2009, BioTeam will be hosting a pre-conference workshop on Data Management & Storage issues for Next-Gen sequencing shops in conjunction with the 2009 “Next Generation Sequencing Data Analysis” conference hosted by CHI: More info: http://www.healthtech.com/sda?c=6910
Genetic Engineering News: Managing Data from Next-Gen Sequencing
Bill Van Etten has a piece in the April 2008 issue of Genetic Engineering News. Excerpt: “…One terabyte of data is not large by today’s standards. An external terabyte disk can be purchased for less than a few hundred dollars at any office supply store. Accumulating one terabyte per day, maintaining it for rapid online [...]
BioInform writeup on IT limitations in next-gen sequencing shops
Excerpt: “As more and more labs adopt next-generation sequencing technology, they are finding that the new instruments are straining their current informatics infrastructures — a challenge the groups are trying to meet with a wide range of different solutions.”
Workgroup server for Next-Gen Sequencing
Bill Van Etten spoke at the ISMB 2007 meeting about next-generation sequencing and the use of a single 8 core system plus RAID array as an alternative to a cluster.
Instead of spending 20 minutes to format an ext3 volume every time you need one, you could just snapshot a ...
Let me add a few remarks about Ext3 as well.
The reason we usually recommend Ext3 instead of XFS is because ...
I'm using these slides to tune SGE 6.2 @ European Space Agency, thanks a lot! 
Great post.
Can you also try our native scale out NFS protocol? Next 3.1 release of Gluster will include it ...
So far my mental architecture is shaping up to be something like this:
Use the ephemeral disks for scratch space and ...
This shows that on-demand HPC still has a ways to go, it is very unfortunate that only ext3 is supported ...
We have had sge62u3 working fine in a 10.5 cluster using cron to startup the sge_execd process on clients. Trying ...
Instead of increasing your disk image size, you could have decreased the memory by writing a very short C program ...