All Posts Tagged With: "wikilims"
WikiLIMS and Toxicogenomics
Stephen Edwards was kind enough to provide his talk slides from his “Wiki-Based Data Management System for Toxicogenomics” presentation at the 2010 Bio-IT-World Conference & Expo. Click on the graphic below to download the PDF formatted version of his presentation.
Updated presentation: BioTeam WikiLIMS Overview
Updated for Feb. 2010, here is the latest overview presentation deck for BioTeam WikiLIMS. Click on the image for the presentation file. Direct link.
Updated WikiLIMS Presentation
Download the 11-14-2009 version of the WikiLIMS Overview presentation by clicking on the graphic below:
Epigenomics & massively parallel sequencing
Masako Suzuki, DVM PhD from the Center for Epigenomics, Department of Genetics at Albert Einstein College of Medicine in New York recently gave a presentation at the 2009 “Next Generation Sequencing Data Analysis” meeting held in Providence, RI. The talk was called “Epigenomic analysis using massively-parallel sequencing”, the presentation slides can be downloaded here: Epigenomic [...]
Latest WikiLIMS overview presentation
The latest overview presentation regarding WikiLIMS can be downloaded from this link (or click the image above).
WikiLIMS Poster from 2008 Nex-Gen Sequencing Conference
This is long overdue but we are now posting up the powerpoint (.ppt) file that was used to create the CSHL WikiLIMS poster that was presented at the 2008 Next-Gen Sequencing Conference in Rhode Island a few weeks ago.
WikiLIMS – Next-Gen Data Management
Excerpt from Mike Cariaso’s recent column in Bio IT World: “…We’re now capturing data electronically with no human intervention required. A single device doing this isn’t particularly compelling, but two or more can be. The wiki becomes an electronic lab notebook written entirely by your machines. Because it can be viewed and edited with a [...]
BioInform writeup on WikiLIMS
Excerpt: “Bioinformatics consulting firm the BioTeam is turning to the same collaborative software that underlies
Wikipedia and numerous other web-based resources to help address the formidable data-management
challenges of next-generation sequencing systems.”
WikiLIMS ABRF/AGBT Poster available
Click on the document image below to download a PDF formated version of the WikiLIMS poster displayed at the 2008 AGBT Meeting. Authored by Mike Cariaso (BioTeam) and Timothy D. Read (U.S. Naval Medical Research Center).
BioInform writeup on WikiLIMS
BioInform has published a nice writeup on WikiLIMS this month.
Instead of spending 20 minutes to format an ext3 volume every time you need one, you could just snapshot a ...
Let me add a few remarks about Ext3 as well.
The reason we usually recommend Ext3 instead of XFS is because ...
I'm using these slides to tune SGE 6.2 @ European Space Agency, thanks a lot! 
Great post.
Can you also try our native scale out NFS protocol? Next 3.1 release of Gluster will include it ...
So far my mental architecture is shaping up to be something like this:
Use the ephemeral disks for scratch space and ...
This shows that on-demand HPC still has a ways to go, it is very unfortunate that only ext3 is supported ...
We have had sge62u3 working fine in a 10.5 cluster using cron to startup the sge_execd process on clients. Trying ...
Instead of increasing your disk image size, you could have decreased the memory by writing a very short C program ...